Cancer Doesn’t Care About Your Model | DeepGeeks Episode 2
Most folks are mystified by technology and the capabilities it can offer. We often have this verruca salt mentality of, if you've seen ***** Wonka, don't care how I want it now. The researchers don't want to and shouldn't need to figure out how to get from point a to point b. We want them to focus their efforts on ending cancer for life. Welcome to Deep Geeks. I'm Doctor Serena Huang. We spend a lot of time in this industry talking about speed, faster inference, faster training, faster iteration. But there's a place where speed isn't just about competitive advantage. It's about whether a patient gets a diagnosis in time. My grandma survived cancer twice. She is ninety four, and I just got back from visiting her last week. And I've been thinking a lot about her in preparing for today's conversation because what my guest is building is for people exactly like her. Our guest today leads one of the most ambitious research infrastructure teams in the country at Memorial Sloan Kettering Cancer Center. And she is here to talk about what it actually takes to build at that scale, what's still in the way, and what AI looks like when the stakes are as high as they get. Jessica Aldet, Head of Enterprise Infrastructure Strategy and Transformation at Memorial Sloan Kettering. Now, as I look at your background, infrastructure and cancer research, that's not a typical combination I see. So I'm curious if you can share with us how you got here and perhaps more importantly, what kept you here? Well, thank you for having me, doctor Wein. I am really thrilled to be able to share, about what the work we're doing, and I certainly did not have a linear career path. Like many millennials, I graduated at the height of the recession. I remember my first job, I was making ten dollars an hour in Brooklyn. Wow. So back then, I used to know all the places to get free food at. But technology has really always been a passion of mine. I think, again, being a millennial, we were the on the cusp of zero tech to the days where your mom would be telling you to be sure that you're home when the street lights go on to the tech boom with PCs and the World Wide Web. So that's kind of where my love started. Yeah. Largely, my career has been in the financial industry, yet a colleague reached out to me about an opportunity at MSK. And this was just up a rail for my parents, who have been in the medical field as physician assistants since nineteen eighty five. Wow. And at least one of their three children would be in the medical field. Albeit a degree of separation, but they were just tickled by that. But as you said, I think that there aren't many of us that haven't experienced cancer or been directly affected by cancer or know someone that has. So the mission of ending cancer for life, MSK's mission, is a noble mission to stand behind, and that's what ultimately keeps everyone coming back. I love it. Yes. I think we need we need that mission everywhere. I can certainly relate to it. I know our audience can as well. In our preparation, you said something very provocative, at least for me as a recovering data scientist. You said algorithm is not the real bottleneck in cancer research. How can algorithm not be the real bottleneck in cancer research? Can you tell us more, and what is more important than that? It's true. Algorithm is not the bottleneck. Infrastructure is. Research has really been going on for centuries. Right? But the differentiating factor between the researchers of today and yesteryear is that today, they have cutting edge, high performing infrastructure platforms to help them advance their science and their research, to really aid them in solving complex problems around image analysis, signal processing, complex modeling, and data analysis. So I think when we say algorithm is not the real bottleneck, we can work with the algorithm. We can work to enhance the code and and the workflows and make sure that all happens. But without the platforms, there's not really a place to put those things. I think a lot of us forget that in particularly cancer research, there is actually a large amount of data. If I think about images, right, this is not a small dataset with a few lines of data. Right? This is not just a small spreadsheet we're talking about. And I can only imagine as a researcher how much of that really takes for discovery purposes and to be able to eventually diagnose, is this cancer or is this something that looks like cancer but isn't cancer? Well, now that we know why algorithm is not the real bottleneck and infrastructure infrastructure is. I want to pivot to talk a little bit more about the specifics. Iris, the supercomputer, which is ranked number two in the US and number four globally. Congratulations, by the way. Thank you. And you have told us that it's able to reduce wall clock time by thirty times. Thirty times. So what would have taken years now take only months in discovery? We have some audience who maybe never thought about supercomputing before today. What does that mean? Can you walk us through what it means for a researcher who's sitting in the office on a regular Monday? And maybe in the process, did anyone underestimate how important and the power of Iris? Absolutely. So let's start at the beginning. When we were designing Iris, we decided to overhaul our entire technology ecosystem, moving away from legacy platforms and tools, consolidating what made sense, and implementing the best in class solutions for life sciences and AIML workloads. Ultimately, we wanted to maximize performance and the amount of research Iris could support. So what does that mean for the researchers that are in the labs and such? Well, most folks, myself included, at times are mystified by technology and the capabilities it can offer. We often have this verruca salt mentality of if you've seen ***** Wonka, don't care how I want it now. The researchers don't want to and shouldn't need to figure out how to get from point a to point b. So we'll put it this way. If everyone wants to own a Ferrari, if there's no road to drive it on, you're never gonna get really far. Right? We don't want the researchers to waste their time thinking about that infrastructure and how they're gonna get from point a to point b. They want that road there yesterday, and we want them to focus their efforts on ending cancer for life. So, ultimately, we've deployed a cutting edge network featuring high speed and low latency as well as several different generations of high performance computing nodes. But the major change that we implemented was our primary file system. We implemented WEKA, which is a modern enterprise class file system. It runs on NVMe based flash storage. It has cloud bursting capabilities for some of the users that are interested in that. But, ultimately, the architectural choices have enhanced our data processing capabilities, streamlined our research methodologies, and provided a high class platform for groundbreaking discoveries. So, essentially, we've built the autobahn for the Ferraris to drive home. I love it. That's a perfect analogy. Indeed. If there's no highway, then there's no place for your Ferrari to go. Yeah. But just park it in the garage. Yes. Exactly. It would just sit there. Beautiful, but not not helpful. Let's go to some use cases now because most importantly, what matters is how does this make a difference in the patient's life, in the clinician's life. And I know you mentioned scheduling as one of the use cases, and I can't tell you how many times I've had to reschedule and call different offices for something simple. And I can just imagine, especially for patients who are wondering, do I have cancer? Or now that I know I do, oh my gosh, that's a huge news. How do I get more scans, get treatment, and schedule things? The last thing you wanna figure out is how do I get to the doctor's office? Can I get to the doctor's office on time? And oh my god, I have to take time off, and can I make it there? So can you walk us through a little bit about what scheduling, is like powered by AI? Sure. Happy to. So in any medical organization, scheduling is kind of the entry point for most. When undergoing cancer care, you often have a team of clinicians that work cohesively on your case, whether they are requiring imaging, testing, diagnostics, things of that nature. We have several locations in and around New York City. We've implemented predictive analytic AI for scheduling. So this really optimizes the patient and clinician's time. What do I mean by that? Well, if we've all been to New York, and do you know that our main campus is located at twelve seventy five York Avenue? Right? We also have a building on fifty fifth, and then there's several others within the area. But if you're doing imaging at main campus and then need to meet with a physician at fifty fifth, it's not gonna take ten minutes to get downtown. We know that it takes longer than that by cab or train with with traffic and such. So those types of predictive analytics afford the schedulers the opportunity to really optimize the timing so that we don't have missed appointments, we aren't overlapping or making expectations of the patient that they can't be somewhere or in two places at once. So it really, really allows the clinicians to spend the time where it's needed most, which is at the bedside of the patient as opposed to missing those opportunities. I love that. Yes. I can think about how I used to have to, you know, use Google Maps on top of, you know, figuring out calendar just to see if I can get through traffic and get somewhere. So that's amazing. And I didn't think of the time that clinicians are waiting too because that's also time wasted before if they wait because someone didn't show up on time or someone is late, and then now everyone after that patient is late and have to wait longer. It's a domino effect for sure. Yeah. And then, you know, there are other things that we're looking to alleviate administrative burdens on our clinicians as well, like dictation. So we've implemented AI voice recognition dictation to aid them in creating really well rounded documentation for the patients. So you go in. When you depart from meeting with them, they'll dictate all of the meeting notes and or the case notes, and then that goes to your portal that you're able to spend your twenty minutes reviewing later on. That's amazing. Is that something, like, where patients will also have to consent to being recorded, or is it just on the clinician's side that they are, recording the diagnosis or the, the visits? Yeah. So the patients don't have any touchpoint with any of the dictation. That's an internal process. So if you think back to and my parents are guilty of it. They had medical charts. You'd see these huge filing cabinets with your last name somehow pinned onto it, and they would physically write out their charts. I remember them being home at dinner writing out charts from their day, and that would get filed away. This really, optimizes the clinician time because as soon as they walk out of the room, they're able to sit down, dictate their notes, and then move on to their next case as opposed to waiting till the end of the day to do all of their case notes. And some of them may do that, you know, still and do their case notes at the end of the day and such. They all have their own routines. But that particular AI platform affords them the opportunity to say what they need to and move up. Right? Between the scheduling and then being able to use the voice notes at the end of a visit, Have you noticed any changes in the patient experience? I'm all about data, of course, so I'm curious if there are any metrics that you can share with us that has changed as a result of this AI. What I will say is that we've obviously gotten resounding feedback from the patients about scheduling options that are available to them. I will share that my mom was a patient of MSK, and she had a fleet of clinicians working on her case. And she actually received her treatment in Monmouth County in New Jersey. Often, would be in New York City and then need to be out in New Jersey for immunotherapy or vice versa. I would say as a patient caregiver at that time, having those things available where I wasn't needing to call and tell them, hey. I can't make it to Monmouth County by one thirty. We're in Manhattan still, and she's still getting her immunotherapy or her radiation, and we're going to miss this appointment. That was all kind of handled for me. So in that use case with my mom and and my dad and I being patient caregivers, that was a relief because was able to focus on keeping my mom's spirits up and spending time with her and just enjoying those moments as opposed to trying to deal with all of the scheduling madness. Absolutely. That is so relatable. Thank you. Thank you for sharing. So we talked a little bit about another type of AI. So personalized medicine because wearables is all the rage and many of us have AI that tell us how we're doing today and how we can optimize our health depending on which spectrum of health we want to optimize. But there are lots of options now. And I'm curious if you can talk a little bit about personalized medicine and wearables. And from where you are sitting, how is it making a difference for your patients? Wearables have been on the scene for a little while now, but they have really ramped up in adoption. I've seen several different options coming out to the market now. We've implemented wearables at MSK a couple years back now. I believe it was twenty twenty two or twenty twenty three. But this really changed the patient experience. So what our wearables do and mind you, it's not for everything. It's not, you know, like a specific watch that does all sorts of things, but this is purely for the clinical, needs of MSK. We've implemented these wearables, and it's changed the experience for our patients because it's able to provide the clinical team with real time data while recovering from the comfort of their home. And so we call it care at home. Cancer treatment inevitably causes patients to become immunocompromised. And in certain cases, it may be best for them to recover outside of the hospital. So this program allows them to do that, be with their family, be in the comfort of their homes, and be able to still transmit data back to their clinicians and their care team, the clinicians at minimum are getting baseline vitals. So that's helpful in the recovery processes that the clinicians can track that in live time to ensure that they are recovering in the best possible manner. Care at home affords these patients the opportunity to recover in the comfort of their homes with their families surrounding them, and it also keeps those folks that may be more immunocompromised out of the hospitals. Okay. That is important because, you don't want to risk their recovery if they are not Exactly. Better off at home. That's perfect because I we we don't think about that. Sometimes we think hospital is the best place for care and for certain patients that simply is not the case. Shifting towards another super hot topic, AgenTeq AI. It is everywhere now. It seems like everyone has AgenTeq AI in their company, in their home, and I'm curious about AgenTeq AI in research. We talked a little bit about Amelia in our prep call. Could you share with us what does Amelia do, and how is it making an impact at MSK? In the digitized world, we're all expecting really fast responses, and that's no different in our organization where our customers were like, what whether it be the physicians or other technologists and such. We want fast responses to our tech related issues. So so much so that it's faster than humans can deliver when dealing with thousands of tickets across an organization as large as ours. In this case, we deployed a Genetic AI named Amelia. This is our internal agent that works on our help desk. So we wanted to reduce call wait times and redundant work. Essentially, our human resources were focusing on a lot of what we call level one issues. I got locked out of my computer. I need my password reset. Can I get an account for this? Can you get me access to that? By implementing Amelia for our help desk, we reduced our call wait time from forty two minutes down to a minute with about a thirty five percent cost savings for Wow. The organization. What does that mean? Because a lot of people are like, oh my gosh. My jobs. AI is going to take my job. But this opportunity allowed us to elevate human resources to focus on high level solutioning. So Amelia will handle those redundant, hey. I got locked out of my computer, or this printer isn't working. You know, my touch tap to go is not working. Can you send an agent? It'll either open a ticket for a higher level agent to come out and service, or it'll handle it itself. So reducing the call times and that ROI for the investment. Now one thing, again, where fear mongering comes in is like, okay. Where are the graduates going to go now that, you know, l one used to be the entry level for graduate students and that it's going to become more difficult for them to break into the workforce? Then I don't think that they're that wrong when it comes to that. I think there's going to need to be a fundamental shift on the education side of things. But I think that this is also going to be a transformation in the way we work. So what would have been l one and entry previously will now be maybe it's l two, and that's the entry point for our graduate students after they depart from school. Yeah. Absolutely. Wait. And did you say forty two minutes to one minute? Forty two minutes down to about a minute. Yes. With thirty five percent cost savings. Yeah. That is incredible. That's incredible. I can imagine that people are much happier as well because we need we need tech. We need it to work yesterday. Yes. Exactly. And I think agentic AI, especially in a regulated industry like yours, can cause a lot of concerns for people. Because when the AI is making decisions without humans, what happens? I think the job loss fears aside, there's also fear for agentic AI making the wrong call, causing harm, for example. And I'm curious if you know what made Amelia safe enough to try, safe enough to deploy even in a regulated environment like yours? This would be where I recommend you bring a sweet treat to your CSO and work collaboratively with that team. But I think for us, what were we trying to solve for? We have some brilliant technologists at this organization that were really just being burdened by redundant work that could be automated to free them up to focus on higher level solutioning for the organization and become more innovative instead of reactive to incoming tickets in the thousands every month or week or what have you. We are a highly regulated industry dealing with patient health information. We worked collaboratively with our security and info sec departments to ensure whatever we were planning to stand up would satisfy security and compliance. So, that would be my first recommendation to who anyone who's looking at at at that? I I think for anyone working in AI, those are your friends even. And a little cupcake will will not hurt for sure. It'll go a long way. It'll go a long way. Is there a place if if someone is looking to start in agentic AI, how do you help them think about where to start? Is there any recommendations that you might have for them regardless of it if it's regulated industry or not? Yeah. I think a lot of times people jump on the train without knowing what direction they wanna take the train in. As much as we wanna get ahead of the curve in technology, we wanna be first to the finish line. When deploying AI, it's important that you have a strategy surrounding your plan. So what are you trying to solve for? What roadblocks are you are are looking to alleviate? What will AI make better or help you with? And so anytime we look to implement something in that nature, those are the questions I recommend folks take a minute and think about. Because just deploying AI to deploy AI is it's like having the cool kid on the block with the cool Ferrari. It's not gonna go anywhere if you don't have the road to drive it and you don't have the destination in mind, essentially. Yeah. I love these analogies. It's so true. And I I think years ago when data is the new oil or, you know, whatever that analogy was, it's almost like data slash now AI have become the shiny object. And we forget the most important question is what are we trying to do? What are we trying to achieve? What KPI will this improve? What are the outcomes we're looking for? And actually get alignment on that problem before solving it either, you know, with more data or with more AI or more sophisticated AI like agentic AI. And it may not be the solution if we if we don't even know where we're going. I would say for those of my geeks that are into Lord of the Rings, do not become a Gollum. My pretty is not going to solve all of your an your issues and questions. So exactly as you said, review the KPIs. What is it going to solve? What is it gonna achieve? How is it going to help the organization? What kind of ROI are we looking at achieving or seeing back for us? We started this conversation earlier about speed because that's incredibly important in cancer research and research in general. But I'm curious if there is such thing as too fast in in discovery because we all have to be balanced in thinking about how do we implement AI responsibly as well. Are there any guardrails that you can share with us and and advise our listeners on? Well, I think I would say and this episode is not sponsored by Ferrari, but I would say when when you're saving lives, the answer is no. Right? Speed the the speed of the vehicle matters. So the performance of the platform matters because those turnaround times mean that we're getting treatment plans based on an individual's vaccinations, immunotherapies, clinical trials. All of those things are getting back into the pay the hands of our clinicians that much faster, which means it's getting to the patient bedside that much faster. Of course, we wanna implement platforms that are secure, ethical, and really well thought out. Speed is really of the utmost importance when it comes to cancer care. I think our organization has done a phenomenal job working collaboratively with NETSAC and InfoSec to ensure that we've put the right kinds of guardrails around the platforms. And if there's any patient health information being leveraged on those platforms that we deidentify it, that it's further encrypted, that there are more secure protocols surrounding those particular use cases. Luckily, for Iris, all the information there is deidentified, so it was an easy MVP on that front. Yes. I think that that makes it so much easier. So for anyone working in with patient data or personal data in general that is more sensitive, finding a way to deidentify helps de risking and getting started, especially with AI. Indeed. So now I I'll have to ask this. If you could fix one thing in medical AI infrastructure, if I give you a magic wand today, what would you do with that magic wand? Well, since you said medical, I guess production bottlenecks aren't the things I I could fix my with my wand. So if someone could solve that, I would be eternally grateful. But I think for me and for our organization, capacity planning is the bane of my existence. I like to say we have known knowns, and then we have known unknowns. So the known knowns are our researchers, our existing existing labs, their workloads. We collaborate with them to understand their future needs, and we can plan for that. That makes sense. Right? Then we have our known unknowns. We know we wanna hire and retain the best and brightest medical personnel and researchers, but we don't know how many we're going to hire or how many people they'll be bringing with them, if it's a lab of eight to ten or one. We don't know what their needs will look like or what type of medical instrumentation they'll be leveraging. Just last year, for example, we onboarded forty eight new medical instruments in the organization. Wow. And that just screams storage needs to me. So how, know, how do we go about addressing that and showing the business the ROI of continued investment in the infrastructure? I I know I've shared this metric before, but I was able to delineate by going back into grants that were awarded to MSK and identify those that were awarded because of the high performance computing platform available to the researchers. And I shared that over a hundred and eighty four million dollars in grant funding was brought to the institution because of that platform. Wow. So the ability to do their research and on that cluster, and having those metrics to translate the technology needs into the business justifications has really helped us be able to show shed the light on why it's an important investment and important continued investment going forward for our research community and our clinicians and our patients as well. Okay. A hundred and eighty four million? Yes. That is not change. Amazing. Certainly not. Congratulations. Wow. Thank you. I feel so inspired by the possibilities with AI and where infrastructure plays a role. I've learned so much, and I have one last question for you. Innovation. The word innovation gets tossed around so much, especially in AI, especially in tech. I'm wondering if you can share with us, what do you think people get wrong about innovation as we close out? This is a really great question, and I think I'm gonna be a little philosophical here, if I may. Go for it. Innovation to me equates to change and progress. Right? There was a time when we were all fearful of computers, and now they're part of our they're just ingrained in our everyday life. Right? There's a lot of, as I mentioned, fear mongering around AI, taking over people's jobs, but I see it as augmentation to the human resources. I don't think anybody's going to lose their job. It's just going to enable them to think at a higher level and work at a faster pace if at all. AI will be transformative in the future of work, and it'll take a mindset shift for us all to become comfortable with that. If you're familiar with the Japanese art known as Kintsugi, I would say that technology with technology, we need to get a bigger hammer to create something progressive and life altering, and then build those pieces back up. You know, hammer it down and build it back up into a beautiful piece of pottery. I I love it. So for those who are less familiar, what you're describing is the the broken ceramic bowls that we see that are pieced back together with was beautiful glue. Right? That's what you're referring to? Gold. Gold. Yes. They put it back together with beautiful gold. So the whole methodology behind that is you may have started with something beautiful, but then it created something even more beautiful. And I think we have a foundation for transformative change with AI coming to the forefront, and it's been around for a long, long time. But now it's getting this its spotlight. It's going to take a mindset shift for folks to become more comfortable with it, and I think it's one of those known unknowns, and that makes people nervous. Thank you. That is so insightful. Thank you, Jess, for joining us today. I've learned a ton. I know our audience will appreciate all your insights as well. Thank you so much. I it was such a pleasure to be here, and I'm grateful for the opportunity to discuss AI and hopefully allay some fears grounding that. Absolutely. Well, I feel inspired. I know our audience will be too. Thanks for listening to Deep Geeks. A huge thank you to my guest today, Jess Aldet. If today's episode made you think differently about how AI gets built or powered, share it with someone who needs to hear it. Find Deep Geeks on Spotify, YouTube, or wherever you get your podcast. Until next time.
Transcript
How Real-World Constraints Shape Medical AI
Jess: Most folks — myself included, at times — are mystified by technology and the capabilities it can offer. We often have this Veruca Salt mentality: if you’ve seen Willy Wonka, “don’t care how, I want it now.” The researchers don’t want to — and shouldn’t need to — figure out how to get from point A to point B. We want them to focus their efforts on ending cancer for life.
Serena: Welcome to DeepGeeks. I’m Dr. Serena Huang. We spend a lot of time in this industry talking about speed — faster inference, faster training, faster iteration — but there’s a place where speed isn’t just about competitive advantage. It’s about whether a patient gets a diagnosis in time.
My grandma survived cancer twice. She is 94. I just got back from visiting her last week, and I’ve been thinking a lot about her in preparing for today’s conversation, because what my guest is building is for people exactly like her.
Our guest today leads one of the most ambitious research infrastructure teams in the country at Memorial Sloan Kettering Cancer Center. She is here to talk about what it actually takes to build at that scale, what’s still in the way, and what AI looks like when the stakes are as high as they get.
Jessica Audette, Head of Enterprise Infrastructure Strategy and Transformation at Memorial Sloan Kettering.
Now, as I look at your background — infrastructure and cancer research — that’s not a typical combination. I’m curious if you can share with us how you got here, and perhaps more importantly, what kept you here.
Jess's Origin Story: From Brooklyn to MSKCC
Jess: Well, thank you for having me, Dr. Huang. I am really thrilled to be able to share the work we’re doing, and I certainly did not have a linear career path. Like many millennials, I graduated at the height of the recession. I remember my first job — I was making $10 an hour in Brooklyn. Back then I used to know all the places to get free food.
Technology has really always been a passion of mine. Being a millennial, we were on the cusp — from zero tech to the days where your mom would tell you to be home when the street lights come on, to the tech boom with PCs and the worldwide web. That’s kind of where my love started.
Largely my career has been in the financial industry, but a colleague reached out to me about an opportunity at MSKCC. That was a thrill for my parents, who have been in the medical field as physician assistants since 1985 — at least one of their three children would be in the medical field. I had a degree of separation, but they were just tickled by that.
As you said, there aren’t many of us who haven’t experienced cancer, been directly affected by cancer, or know someone who has. The mission of ending cancer for life — MSKCC’s mission — is a noble mission to stand behind, and that’s what ultimately keeps everyone coming back.
The Algorithm Isn't the Bottleneck — Infrastructure Is
Serena: I love it. I think we need that mission everywhere. I can certainly relate to it, and I know our audience can as well.
Let’s nerd out a little bit. In our preparation for this podcast, you said something very provocative — at least for me, as a recovering data scientist. You said the algorithm is not the real bottleneck in cancer research. How can the algorithm not be the bottleneck? Can you tell us more? What is more important than that?
Jess: It is true — the algorithm is not the bottleneck. Infrastructure is. Research has really been going on for centuries, but the differentiating factor between the researchers of today and yesteryear is that today they have cutting-edge, high-performant infrastructure platforms to help them advance their science and their research. To really aid them in solving complex problems around image analysis, signal processing, complex modeling, and data analysis. When we say the algorithm is not the real bottleneck, it’s because we can work with the algorithm — we can enhance the code, optimize the workflows. But without the platforms, there’s not really a place to put those things.
Serena: Absolutely. A lot of us forget that in cancer research there is a massive amount of data. Think about medical imaging — this is not a small dataset with a few lines of data, not a small spreadsheet. The scale is enormous.
Now that we know infrastructure is the real bottleneck, let’s get specific. IRIS, the supercomputer, is ranked #2 in the U.S. and #4 globally. Congratulations, by the way. You’ve told us it’s able to reduce wall clock time by 30 times — so what would’ve taken years now takes only months in discovery.
We have some audience members who may have never thought about supercomputing before today. What does that actually mean for a researcher sitting in their office on a regular Monday? And did anyone underestimate the power of IRIS?
Inside IRIS: Building the Autobahn for Ferraris
Jess: Absolutely. Let’s start at the beginning. When we were designing IRIS, we decided to overhaul our entire technology ecosystem — moving away from legacy platforms and tools, consolidating what made sense, and implementing best-in-class solutions for life sciences and AI/ML workloads. Ultimately, we wanted to maximize performance and the amount of research IRIS could support.
So what does that mean for the researchers in the labs? Most folks — myself included, at times — are mystified by technology and the capabilities it can offer. We often have this Veruca Salt mentality: if you’ve seen Willy Wonka, “don’t care how, I want it now.” The researchers don’t want to — and shouldn’t need to — figure out how to get from point A to point B.
So we’ll put it this way: if everyone wants to own a Ferrari, but there’s no road to drive it on, you’re never going to get very far. We don’t want the researchers wasting their time thinking about infrastructure. They want that road there. We want them to focus their efforts on ending cancer for life.
So ultimately, we deployed a cutting-edge network featuring high speed and low latency, as well as several different generations of high-performance computing nodes. But the major change we implemented was our primary file system. We deployed WEKA, a modern enterprise-class file system that runs on NVMe-based flash storage. It has cloud-bursting capabilities for users who want it, and ultimately, the architectural choices have enhanced our data processing capabilities, streamlined our research methodologies, and provided a world-class platform for groundbreaking discoveries.
So essentially — we built the Autobahn for the Ferraris to drive on.
Serena: I love it. That’s a perfect analogy. If there’s no highway, there’s no place for your Ferrari to go.
Jess: You’d just park it in the garage.
Serena: Exactly. Beautiful, but not helpful.
AI-Powered Scheduling: Getting the Right Patient to the Right Place
Serena: Let’s go to some use cases, because most importantly — what matters is how does this make a difference in the patient’s life and the clinician’s life?
I can’t tell you how many times I’ve had to reschedule and call different offices for something simple. And I can imagine, especially for patients who are wondering if they have cancer — or who now know they do — that’s enormous news. How do I get more scans, get treatment, schedule everything? The last thing you want to figure out is: can I make it to the right doctor’s office on time?
Can you walk us through what scheduling looks like powered by AI?
Jess: Sure, happy to. In any medical organization, scheduling is kind of the entry point for most patients. When undergoing cancer care, you often have a team of clinicians working cohesively on your case — requiring imaging, testing, diagnostics, things of that nature. We have several locations in and around New York City.
We’ve implemented predictive analytic AI for scheduling. This really optimizes both the patient’s and the clinician’s time. Our main campus is located at 1275 York Avenue. We also have a building on 55th, and several others within the area. If you’re doing imaging at the main campus and then need to meet with a physician at 55th, it’s not going to take 10 minutes to get downtown — we know it takes longer than that by cab or train with traffic. Those predictive analytics give schedulers the opportunity to really optimize the timing so that we don’t have missed appointments, we aren’t overlapping, and we’re not making unrealistic expectations of the patient — like being in two places at once.
It really allows clinicians to spend their time where it’s needed most: at the bedside of the patient.
Serena: I love that. I used to have to use Google Maps on top of my calendar just to figure out if I could get through traffic in time. And I hadn’t thought about the clinician’s time either — if they’re waiting because a patient didn’t show up, or someone is late, then everyone after that patient is late and has to wait.
Jess: It’s a domino effect for sure.
Voice Dictation & Cutting Clinician Paperwork
Jess: And there are other things we’re doing to alleviate administrative burdens on our clinicians, like dictation. We’ve implemented AI voice recognition and dictation to aid them in creating really well-rounded documentation. When a patient departs from a visit, the clinician dictates all of the meeting notes and case notes, and then that goes to a portal that the patient is able to review later.
Serena: That’s amazing. Is that something where patients would need to consent to being recorded, or is it just on the clinician side?
Jess: The patients don’t have any touchpoint with the dictation — that’s an internal process. Think back to what my parents used to do: huge filing cabinets with your last name somehow pinned to them, and they would physically write out their charts. I remember them being home at dinner, writing out charts from their day, and that would get filed away.
This really optimizes the clinician’s time. As soon as they walk out of the room, they can sit down, dictate their notes, and move on to their next case — as opposed to waiting until the end of the day to do all their case notes. They all have their own routines, but this platform gives them the opportunity to say what they need to and move on.
Serena: Love that.
What Better Scheduling Actually Feels Like — A Personal Story
Serena: So between AI-powered scheduling and voice notes after a visit — have you noticed any changes in the patient experience? Are there any metrics you can share?
Jess: What I will say is that we’ve gotten resounding feedback from patients about the scheduling options available to them.
I’ll share that my mom was a patient of MSKCC. She had a fleet of clinicians working on her case, and she often received treatment in Monmouth County, New Jersey — but would also be in New York City for other appointments. As a patient caregiver at that time, having the scheduling handled meant I wasn’t needing to call and say, “Hey, we can’t make it to Monmouth by 1:30 — we’re still in Manhattan and she’s still getting her radiation, and we’re going to miss this appointment.” That was all taken care of.
In that use case, with my mom and my dad and I being patient caregivers — that was a relief. It allowed me to focus on keeping my mom’s spirits up and spending time with her, just enjoying those moments, as opposed to dealing with all the scheduling madness.
Serena: That is so relatable. Thank you for sharing.
Wearables & Care at Home: Real-Time Recovery Data
Serena: All right. We talked a little about personalized medicine — wearables are all the rage, and many of us have AI that tells us how we’re doing and how to optimize our health. But you’re doing something different. Can you talk about wearables and personalized medicine from where you sit, and how it’s making a difference for your patients?
Jess: Wearables have been on the scene for a little while now, but they’ve really ramped up in adoption. We’ve implemented wearables at MSKCC — I believe it was 2022 or 2023 — and this really changed the patient experience.
Our wearables aren’t like a general-purpose smartwatch that does all sorts of things. This is purely for the clinical needs of MSKCC. We’ve implemented these wearables and they’ve changed the experience for patients because they provide the clinical team with real-time data while patients are recovering from the comfort of their home. We call it “Care at Home.”
Cancer treatment inevitably causes patients to become immunocompromised, and in certain cases it may be best for them to recover outside of the hospital. This program allows them to do that — be with their family, be in the comfort of their homes — while still transmitting data back to their clinicians and care team. That live data ensures they’re recovering in the best possible manner.
And it also keeps immunocompromised patients out of the hospital, where they face additional health risks.
Serena: That is so important. Sometimes we think the hospital is the best place for care, but for certain patients, that simply is not the case.
Meet Amelia: MSKCC's Agentic AI on the Help Desk
Serena: Shifting to another super hot topic — agentic AI. It is everywhere now. It seems like everyone has agentic AI in their company, in their home. At MSKCC, you’ve deployed an agent called Amelia. Can you share what she does and how she’s making an impact?
Jess: In the digitized world, we’re all expecting really fast responses — and that’s no different in our organization, where physicians and other technologists want fast resolutions to tech-related issues. So much so that it’s faster than humans can deliver when dealing with thousands of tickets across an organization as large as ours.
So we deployed agentic AI named Amelia. This is our internal agent that works on our help desk. We wanted to reduce call wait times and redundant work. Our human resources were spending a lot of time on what we call Level 1 issues: “I got locked out of my computer,” “I need my password reset,” “Can I get an account for this?”
By implementing Amelia for our help desk, we reduced our call wait time from 42 minutes down to a minute, with about a 35% cost savings for the organization.
What does that mean? Because a lot of people say, “Oh my gosh, AI is going to take my job” — but this opportunity allowed us to elevate our human resources to focus on high-level solutioning. Amelia handles the redundant requests: “I got locked out of my computer,” “This printer isn’t working,” “My tap-to-go isn’t working.” She’ll either open a ticket for a higher-level agent to come out and service, or she’ll handle it herself.
Now, the fear-mongering that comes in is: where are the graduates going to go? Level 1 used to be the entry point for graduate students. I don’t think those concerns are entirely wrong. I think there’s going to need to be a fundamental shift on the education side of things. But I also think this is going to be a transformation in the way we work. What would’ve been Level 1 and entry-level previously will now maybe be Level 2 — and that becomes the entry point for our graduate students.
Serena: Wait — did you say 42 minutes to one minute?
Jess: 42 minutes down to about a minute. Yes. With 35% cost savings.
Serena: That’s incredible. I can imagine people are much happier — we need tech to work yesterday.
Jess: Yes, exactly.
Deploying AI Safely in Regulated Environments
Serena: Agentic AI in a regulated industry like yours can cause a lot of concern. When AI is making decisions without human input, what happens? Beyond job loss fears, there’s also concern about agentic AI making the wrong call. What made Amelia safe enough to deploy in a regulated environment like MSKCC?
Jess: I think this is where I recommend you bring a sweet treat to your CISO and work collaboratively with that team. But for us, the question was: what are we trying to solve for? We have brilliant technologists at this organization who were being burdened by redundant work — work that could be automated to free them up to focus on higher-level solutioning and become more innovative instead of reactive to thousands of incoming tickets every month.
We’re a highly regulated industry dealing with patient health information. We worked collaboratively with our security and InfoSec departments to ensure whatever we were planning to stand up would satisfy security and compliance requirements. That would be my first recommendation to anyone looking at this.
Serena: I love that. For anyone working in AI — those are your friends. And a little cupcake won’t hurt.
Jess: It goes a long way.
How to Start with Agentic AI: Strategy Before Deployment
Serena: If someone is looking to start with agentic AI — regulated industry or not — how do you help them think about where to begin?
Jess: A lot of times people jump on the train without knowing what direction they want to take it. As much as we want to get ahead of the curve in technology, when deploying AI it’s important to have a strategy surrounding your plan. What are you trying to solve for? What roadblocks are you looking to alleviate? What will AI make better? Those are the questions I recommend people take a minute and think about, because just deploying AI to deploy AI — it’s like having the cool Ferrari on the block. It’s not going anywhere if you don’t have the road to drive it on and the destination in mind.
Serena: So true. Years ago it was “data is the new oil” — now AI has become the shiny object, and we forget the most important questions: What are we trying to do? What KPI will this improve? What outcomes are we looking for? We need alignment on the problem before we pick the solution. And it may not be AI if we don’t even know where we’re going.
Jess: For my fellow geeks who are into Lord of the Rings: do not become a Gollum. “My precious” is not going to solve all your issues and questions. Review the KPIs. What is it going to solve? What is it going to achieve? How is it going to help the organization? What ROI are you looking to see?
Is There Such a Thing as Too Fast in Cancer Research?
Serena: We started this conversation talking about speed — and speed is critically important in cancer research. But is there such a thing as too fast in discovery? How do you balance acceleration with responsible AI principles? What guardrails exist at MSKCC?
Jess: And this episode is not sponsored by Ferrari — but when you’re saving lives, the answer is no. Speed matters. The performance of the platform matters, because faster turnaround times mean treatment plans, vaccinations, immunotherapies, and clinical trials are getting into the hands of clinicians that much faster, which means they’re reaching the patient bedside that much faster.
Of course, we want to implement platforms that are secure, ethical, and really well thought out. Speed is of the utmost importance in cancer care, but our organization has done a phenomenal job working collaboratively with our network and InfoSec teams to ensure we’ve put the right guardrails around the platforms. Any patient health information being leveraged on those platforms is de-identified, further encrypted, and surrounded by more secure protocols.
And for IRIS specifically — the data is de-identified. So it was an easy MVP on that front.
Serena: That makes it so much easier. For anyone working with patient data or sensitive personal data in general — finding a way to de-identify helps de-risk getting started with AI.
Jess: Indeed.
Magic Wand: Solving Capacity Planning
Serena: If you could fix one thing in medical AI infrastructure — if I gave you a magic wand today — what would you do with it?
Jess: Capacity planning is the bane of my existence. I like to say we have known knowns and known unknowns.
The known knowns are our researchers, our existing labs, their workloads. We collaborate with them to understand their future needs and plan accordingly.
Then we have our known unknowns. We know we want to hire and retain the best and brightest medical personnel and researchers. We don’t know how many we’re going to hire, or how many people they’ll bring with them — whether it’s a lab of 8 to 10 or a lab of 1. We don’t know what their needs will look like or what medical instrumentation they’ll be using. Just last year, we onboarded 48 new medical instruments in the organization — and that just screams storage needs to me.
So how do we address that and show the business the ROI of continued infrastructure investment? I was able to go back through grants awarded to MSKCC and identify those that were awarded specifically because of the high-performance computing platform available to researchers. I shared that over $184 million in grant funding was brought to the institution because of that platform.
Having those metrics to translate technology needs into business justifications has helped us show the light on why this is an important investment — for our research community, our clinicians, and our patients.
Serena: $184 million. That is not chump change. Congratulations. Wow.
What the Industry Gets Wrong About Innovation
Serena: One last question. Innovation — the word gets tossed around so much, especially in AI and tech. From your perspective, what does the industry get completely wrong about what innovation actually means?
Jess: This is a great question, and I’m going to get a little philosophical if I may. Innovation to me equates to change and progress. There was a time when we were all fearful of computers, and now they’re just ingrained in everyday life. There’s a lot of fearmongering around AI taking over people’s jobs, but I see it as augmentation to human resources. I don’t think anybody is going to lose their job — AI will enable people to think at a higher level and work at a faster pace.
AI will be transformative in the future of work, and it’ll take a mindset shift for us all to become comfortable with that.
If you’re familiar with the Japanese art known as kintsugi — where broken pottery is repaired with gold — I would say that with technology, we need to get a bigger hammer to create something progressive and life-altering. Then build those pieces back up into something beautiful.
Serena: For those less familiar — you’re describing the broken ceramic bowls pieced back together with beautiful gold. Yes?
Jess: Exactly. They put it back together with beautiful gold. The methodology behind that is: you may have started with something beautiful, but through the process of breaking and rebuilding, you create something even more beautiful. I think we have a foundation for transformative change with AI coming to the forefront. It’s been around for a long time, but now it’s getting its spotlight. It’s going to take a mindset shift for folks to become more comfortable with it — and I think it’s one of those known unknowns that makes people nervous.
Serena: Thank you. That is so insightful. Thank you, Jess, for joining us today. I’ve learned a ton, and I know our audience will appreciate all your insights as well.
Jess: Thank you so much. It was such a pleasure to be here, and I’m grateful for the opportunity to discuss AI and hopefully allay some fears.
Serena: Absolutely. I feel inspired — and I know our audience will be too. Thank you.
Serena: Thanks for listening to DeepGeeks. A huge thank you to our guest today, Jessica Audette. If today’s episode makes you think differently about how AI gets built or powered, share it with someone who needs to hear it. Find DeepGeeks on Spotify, YouTube, or wherever you get your podcasts. Until next time.
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